Prep Work:
All times in ET
Resources for each day (links for assignment, any relevant recordings or slides, etc.) will be linked in the schedule below
Time | Tuesday | Wednesday | Thursday | Friday |
---|---|---|---|---|
9:00 - 12:00 | The Unix Shell | Python: numpy and matplotlib | Python: While, If, Functions | Review and advanced topics |
12:00 - 1:00 | Lunch | Lunch | Lunch | Lunch |
1:00 - 3:00 | Python Introduction | Git | Python: Dictionaries | Assignment: the Wright-Fisher Model |
3:00 - 3:15 | Break | Break | Break | Break |
3:15 - 5:00 | File Parsing in Python | Git and Plotting: RNAseq Data | Dictionaries: .gff Files | Assignment: the Wright-Fisher Model |
qbb2023-answers
repositoryWeek | Date | Instructor | Topic | Resubmission Deadline |
---|---|---|---|---|
1 | 9/15 | Rajiv McCoy | Linear regression | | |
2 | 9/22 | Mike Schatz | Genome assembly | | |
3 | 9/29 | Dylan Taylor | Sequence alignment | | |
4 | 10/6 | Mike Sauria | ChIP-seq | | |
5 | 10/13 | Rajiv McCoy | Variant calling | | |
- | 10/20 | No Class | Retreat | | |
6 | 10/27 | Rajiv McCoy | GWAS | | |
7 | 11/3 | Mike Sauria | Single-molecule sequencing and DNA modifications | 11/27 |
8 | 11/10 | Mike Sauria | 3D Genome | | |
9 | 11/17 | Rajiv McCoy | Bulk RNA-seq | 12/8 |
- | 11/24 | No class | Thanksgiving Break | | |
10 | 12/1 | Rajiv McCoy | Data Visualization | | |
11 | 12/8 | Mike Sauria | Single-cell RNA-seq | 12/15 |